Variant report

Variant	rs687399
Chromosome Location	chr8:102525876-102525877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:102525583..102527812-chr8:102595474..102597221,3	MCF-7	breast:
2	chr8:102513814..102516595-chr8:102524555..102526490,2	K562	blood:
3	chr8:102524517..102526581-chr8:102582052..102584606,2	MCF-7	breast:
4	chr2:238395194..238397049-chr8:102525834..102528542,2	MCF-7	breast:
5	chr8:102326841..102405579-chr8:102488885..102536287,493	MCF-7	breast:
6	chr8:102525449..102527790-chr8:102621194..102623795,2	MCF-7	breast:
7	chr8:102524405..102527812-chr8:102618321..102621883,4	MCF-7	breast:
8	chr8:102343773..102345760-chr8:102525167..102527798,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254063	Chromatin interaction
ENSG00000115648	Chromatin interaction
ENSG00000271560	Chromatin interaction
ENSG00000253644	Chromatin interaction
ENSG00000228224	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2847730	0.80[ASN][1000 genomes]
rs475304	0.80[ASN][1000 genomes]
rs514588	0.82[AMR][1000 genomes]
rs515622	1.00[AFR][1000 genomes]
rs523244	0.80[ASN][1000 genomes]
rs534285	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs546630	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs560043	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs561626	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs567389	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs568894	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs589919	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs687909	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102507400-102526600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102514800-102526600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:102517200-102526200	Weak transcription	Gastric	stomach
4	chr8:102517200-102526200	Weak transcription	Stomach Mucosa	stomach
5	chr8:102517200-102526400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:102517200-102526600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:102517400-102526000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:102517400-102526200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:102517400-102526400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:102517400-102526600	Weak transcription	Fetal Intestine Large	intestine
11	chr8:102518200-102526000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:102518800-102526000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:102519200-102526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:102519200-102526600	Weak transcription	A549	lung
15	chr8:102521000-102526000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:102521000-102526000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:102521000-102526200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:102521000-102526200	Weak transcription	HMEC	breast
19	chr8:102521000-102526400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:102521000-102526400	Weak transcription	NHEK	skin
21	chr8:102521200-102526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:102521200-102526200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:102521200-102526400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:102521200-102526600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:102522000-102526200	Weak transcription	Fetal Lung	lung
26	chr8:102525200-102527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:102525800-102527000	Enhancers	Pancreas	Pancrea

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