Variant report

Variant	rs6874371
Chromosome Location	chr5:95210050-95210051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95209193..95210942-chr5:95216807..95218472,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10428657	1.00[EUR][1000 genomes]
rs10428702	1.00[EUR][1000 genomes]
rs10515233	1.00[EUR][1000 genomes]
rs10515234	1.00[EUR][1000 genomes]
rs11948037	1.00[EUR][1000 genomes]
rs12514954	1.00[EUR][1000 genomes]
rs12517786	1.00[EUR][1000 genomes]
rs12522489	1.00[EUR][1000 genomes]
rs12523306	1.00[EUR][1000 genomes]
rs17085220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085223	1.00[EUR][1000 genomes]
rs17085224	1.00[EUR][1000 genomes]
rs17085227	1.00[EUR][1000 genomes]
rs17085243	1.00[EUR][1000 genomes]
rs17085339	1.00[EUR][1000 genomes]
rs17085366	1.00[EUR][1000 genomes]
rs17085373	1.00[EUR][1000 genomes]
rs17085393	1.00[EUR][1000 genomes]
rs17085426	1.00[EUR][1000 genomes]
rs28521883	1.00[EUR][1000 genomes]
rs3756701	1.00[EUR][1000 genomes]
rs3777174	1.00[EUR][1000 genomes]
rs3777176	1.00[EUR][1000 genomes]
rs3777177	1.00[EUR][1000 genomes]
rs3777180	1.00[EUR][1000 genomes]
rs41276261	1.00[EUR][1000 genomes]
rs55763081	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56776515	1.00[EUR][1000 genomes]
rs58389685	1.00[EUR][1000 genomes]
rs60908902	1.00[EUR][1000 genomes]
rs61268106	1.00[EUR][1000 genomes]
rs6143071	1.00[EUR][1000 genomes]
rs6556897	1.00[EUR][1000 genomes]
rs6861075	1.00[EUR][1000 genomes]
rs6870388	1.00[EUR][1000 genomes]
rs6872006	1.00[EUR][1000 genomes]
rs6891082	1.00[EUR][1000 genomes]
rs6891633	1.00[EUR][1000 genomes]
rs6893788	1.00[EUR][1000 genomes]
rs73771827	1.00[EUR][1000 genomes]
rs7700606	1.00[EUR][1000 genomes]
rs7724475	1.00[EUR][1000 genomes]
rs7736480	1.00[EUR][1000 genomes]
rs9687631	1.00[EUR][1000 genomes]
rs977128	1.00[EUR][1000 genomes]
rs977129	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1019566	chr5:95180352-95300677	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95195200-95217400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:95201400-95212200	Weak transcription	Placenta	Placenta
3	chr5:95202000-95212600	Weak transcription	Gastric	stomach
4	chr5:95202800-95217200	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:95205400-95210200	Enhancers	HepG2	liver
6	chr5:95206600-95214200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:95206600-95218800	Weak transcription	HSMM	muscle
8	chr5:95206800-95214000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:95206800-95217400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:95207000-95213800	Weak transcription	Fetal Intestine Small	intestine
11	chr5:95207200-95213800	Weak transcription	GM12878-XiMat	blood
12	chr5:95207400-95218000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:95207400-95219000	Weak transcription	Psoas Muscle	Psoas
14	chr5:95208200-95210200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:95208600-95214400	Weak transcription	Right Atrium	heart
16	chr5:95208800-95214000	Weak transcription	K562	blood
17	chr5:95208800-95217600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:95209200-95210400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr5:95209200-95210600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr5:95209600-95211000	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr5:95209600-95212400	Weak transcription	Stomach Mucosa	stomach
22	chr5:95209600-95214000	Weak transcription	Fetal Intestine Large	intestine
23	chr5:95209800-95210400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr5:95209800-95212000	Weak transcription	Liver	Liver
25	chr5:95210000-95210200	Enhancers	Right Ventricle	heart
26	chr5:95210000-95210800	Enhancers	Fetal Heart	heart

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