Variant report

Variant	rs6874877
Chromosome Location	chr5:116525705-116525706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11955025	0.94[EUR][1000 genomes]
rs17141256	0.94[EUR][1000 genomes]
rs57262132	0.81[AFR][1000 genomes]
rs61561636	0.84[AFR][1000 genomes]
rs6595015	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6595016	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67212247	0.83[AFR][1000 genomes]
rs68065103	0.82[AFR][1000 genomes]
rs6869373	0.93[EUR][1000 genomes]
rs72810588	0.83[AFR][1000 genomes]
rs7718135	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7718941	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116525200-116525800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:116525200-116525800	Enhancers	Brain Substantia Nigra	brain
3	chr5:116525400-116526000	Enhancers	Brain Angular Gyrus	brain
4	chr5:116525400-116526400	Enhancers	Colon Smooth Muscle	Colon
5	chr5:116525600-116526400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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