Variant report

Variant	rs6875712
Chromosome Location	chr5:57064861-57064862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57064652..57067649-chr5:57101183..57103677,2	MCF-7	breast:
2	chr5:57057021..57059491-chr5:57061557..57064948,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10054371	0.87[EUR][1000 genomes]
rs10057880	1.00[YRI][hapmap]
rs10072292	1.00[YRI][hapmap]
rs1016457	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs10213766	0.87[EUR][1000 genomes]
rs1023572	0.87[EUR][1000 genomes]
rs1023573	0.87[EUR][1000 genomes]
rs1347071	1.00[YRI][hapmap]
rs1821210	0.87[MKK][hapmap];1.00[YRI][hapmap]
rs1861052	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1861055	0.86[EUR][1000 genomes]
rs1861056	0.87[EUR][1000 genomes]
rs1861059	0.82[CHB][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap]
rs2408849	0.82[EUR][1000 genomes]
rs2408850	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2408854	0.87[MKK][hapmap];1.00[YRI][hapmap]
rs2568537	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2898028	0.82[EUR][1000 genomes]
rs4285175	0.87[MKK][hapmap]
rs4403130	0.87[MKK][hapmap];1.00[YRI][hapmap]
rs4458541	0.87[MKK][hapmap];1.00[YRI][hapmap]
rs4508990	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588536	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699913	0.87[MKK][hapmap];1.00[YRI][hapmap]
rs4700233	0.87[MKK][hapmap];1.00[YRI][hapmap]
rs6866242	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6868969	0.87[EUR][1000 genomes]
rs6879952	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6890613	0.84[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs7708665	0.80[EUR][1000 genomes]
rs7735778	0.87[EUR][1000 genomes]
rs854036	0.88[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57056400-57065200	Weak transcription	Aorta	Aorta
2	chr5:57062200-57075000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:57064200-57065400	Enhancers	Adipose Nuclei	Adipose
4	chr5:57064200-57065400	Enhancers	NHLF	lung
5	chr5:57064200-57065600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:57064400-57065200	Enhancers	Osteobl	bone
7	chr5:57064400-57065400	Enhancers	Fetal Lung	lung
8	chr5:57064600-57065200	Enhancers	NHDF-Ad	bronchial
9	chr5:57064800-57065600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:57064800-57068400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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