The 2.0 version of rSNPBase

Variant report

Variant rs6875867
Chromosome Location chr5:58452915-58452916
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58427200-58454000 Weak transcription Primary neutrophils fromperipheralblood blood
2 chr5:58437400-58454000 Weak transcription Rectal Smooth Muscle rectum
3 chr5:58439000-58484000 Weak transcription Fetal Kidney kidney
4 chr5:58447000-58453400 Enhancers Primary T cells from cord blood blood
5 chr5:58447600-58454800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr5:58447600-58464000 Weak transcription Right Ventricle heart
7 chr5:58447600-58465200 Weak transcription Right Atrium heart
8 chr5:58447600-58473200 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr5:58447600-58473400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr5:58447600-58479600 Weak transcription Left Ventricle heart
11 chr5:58447800-58453000 Weak transcription Fetal Heart heart
12 chr5:58448600-58453400 Weak transcription Primary hematopoietic stem cells blood
13 chr5:58449000-58453800 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr5:58449000-58453800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr5:58449000-58456400 Weak transcription Fetal Intestine Large intestine
16 chr5:58449200-58453000 Weak transcription Colon Smooth Muscle Colon
17 chr5:58449200-58453400 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr5:58449200-58453800 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr5:58449200-58454200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr5:58449200-58457000 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr5:58449200-58457600 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr5:58449400-58473600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr5:58449600-58453800 Weak transcription Psoas Muscle Psoas
24 chr5:58449600-58457000 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr5:58449800-58453800 Weak transcription Small Intestine intestine
26 chr5:58449800-58454000 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr5:58449800-58456400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr5:58449800-58489400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr5:58450000-58460200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr5:58451400-58459600 Weak transcription Fetal Lung lung
31 chr5:58451600-58455200 Enhancers Fetal Muscle Leg muscle
32 chr5:58452000-58453400 Weak transcription Placenta Amnion Placenta Amnion
33 chr5:58452000-58456800 Weak transcription Fetal Thymus thymus
34 chr5:58452000-58457000 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr5:58452200-58454800 Enhancers HSMM muscle
36 chr5:58452200-58455000 Enhancers Fetal Adrenal Gland Adrenal Gland
37 chr5:58452200-58464000 Weak transcription Hela-S3 cervix
38 chr5:58452800-58454000 Enhancers Muscle Satellite Cultured Cells --
39 chr5:58452800-58454200 Enhancers HSMMtube muscle
40 chr5:58452800-58458200 Genic enhancers A549 lung

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Last update: Aug 31, 2015