Variant report

Variant	rs6876873
Chromosome Location	chr5:126237383-126237384
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126231811..126233639-chr5:126236642..126239231,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10038419	1.00[EUR][1000 genomes]
rs1543817	1.00[EUR][1000 genomes]
rs28506167	1.00[EUR][1000 genomes]
rs28583988	1.00[EUR][1000 genomes]
rs56863210	1.00[EUR][1000 genomes]
rs6875714	1.00[EUR][1000 genomes]
rs73333495	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv969207	chr5:126232397-126237806	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126201800-126253400	Weak transcription	A549	lung
2	chr5:126205200-126245600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:126205400-126245600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:126205600-126238200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:126214200-126237400	Weak transcription	Fetal Brain Female	brain
6	chr5:126214200-126238600	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:126214200-126238600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:126214200-126245400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:126214600-126245200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:126214600-126250400	Weak transcription	Pancreas	Pancrea
11	chr5:126214800-126255200	Weak transcription	Psoas Muscle	Psoas
12	chr5:126215400-126245000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:126220400-126238400	Weak transcription	Ovary	ovary
14	chr5:126220600-126238400	Weak transcription	Left Ventricle	heart
15	chr5:126220800-126237600	Weak transcription	Right Ventricle	heart
16	chr5:126220800-126245400	Weak transcription	HUVEC	blood vessel
17	chr5:126224000-126238400	Weak transcription	K562	blood
18	chr5:126229600-126253600	Weak transcription	Brain Anterior Caudate	brain
19	chr5:126229800-126245800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr5:126230200-126238200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr5:126230200-126238400	Weak transcription	Lung	lung
22	chr5:126231200-126254000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr5:126231400-126245800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:126232400-126240000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:126232400-126245800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:126232600-126245400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:126232600-126245800	Weak transcription	Fetal Kidney	kidney
28	chr5:126233800-126256000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:126234000-126239200	Strong transcription	Primary B cells from cord blood	blood
30	chr5:126234800-126238000	Weak transcription	HSMMtube	muscle
31	chr5:126236000-126239000	Enhancers	Fetal Brain Male	brain
32	chr5:126236000-126239200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr5:126237000-126237600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr5:126237000-126237600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr5:126237000-126237800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr5:126237000-126237800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr5:126237000-126239200	Strong transcription	HSMM	muscle
38	chr5:126237000-126254000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:126237200-126237600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr5:126237200-126237600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr5:126237200-126237600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:126237200-126237800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr5:126237200-126237800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr5:126237200-126237800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr5:126237200-126238000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:126237200-126238600	Enhancers	Brain Germinal Matrix	brain

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