Variant report

Variant	rs6876988
Chromosome Location	chr5:88673472-88673473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:88665253..88669084-chr5:88671489..88674465,4	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10514305	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1158150	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12653011	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12653245	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12659528	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867541	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16867551	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867552	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867553	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867554	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867563	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2059853	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34814331	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56756608	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59842575	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61418152	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6870380	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883052	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6883088	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7736534	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532159	chr5:88016214-88783092	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv529543	chr5:88348147-88783092	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv830387	chr5:88547862-88682442	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830388	chr5:88578939-88793870	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv598927	chr5:88647766-88780868	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
7	nsv830389	chr5:88669984-88860383	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88668200-88673600	Weak transcription	K562	blood
2	chr5:88670600-88673800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:88672000-88674000	Enhancers	Brain Germinal Matrix	brain
4	chr5:88672600-88673800	Enhancers	Fetal Brain Female	brain
5	chr5:88672800-88673600	Weak transcription	Fetal Brain Male	brain
6	chr5:88672800-88674000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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