Variant report

Variant	rs6877534
Chromosome Location	chr5:145420456-145420457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:145420400-145420550	SAEC	small airway:	n/a	n/a
2	CTCF	chr5:145420440-145420590	WERI-Rb-1	eye:	n/a	n/a
3	MYC	chr5:145420453-145420456	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr5:145420340-145420490	GM12873	blood:	n/a	n/a
5	MAX	chr5:145420384-145420730	K562	blood:	n/a	chr5:145420516-145420527 chr5:145420517-145420526 chr5:145420515-145420528 chr5:145420517-145420526
6	GATA1	chr5:145420036-145421587	PBDE	blood:	n/a	chr5:145420822-145420830
7	CTCF	chr5:145420320-145420470	GM12872	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:145283677..145286579-chr5:145418109..145420947,2	MCF-7	breast:
2	chr5:145419348..145421687-chr5:145425809..145428439,2	MCF-7	breast:
3	chr5:145411245..145414263-chr5:145417438..145421114,3	MCF-7	breast:
4	chr5:145418628..145420573-chr5:145423016..145424801,2	K562	blood:
5	chr5:145418838..145422212-chr5:145426068..145429062,3	K562	blood:
6	chr5:145411912..145413559-chr5:145419162..145422103,2	K562	blood:

Variant related genes	Relation type
SH3RF2	TF binding region

rs_ID	r²[population]
rs17104316	1.00[AMR][1000 genomes]
rs56354895	1.00[AMR][1000 genomes]

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145373400-145428400	Weak transcription	Fetal Stomach	stomach
2	chr5:145407600-145421600	Weak transcription	NH-A	brain
3	chr5:145412600-145453200	Weak transcription	Pancreas	Pancrea
4	chr5:145414000-145435200	Weak transcription	Aorta	Aorta
5	chr5:145417400-145420600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:145417400-145421000	Enhancers	Adipose Nuclei	Adipose
7	chr5:145417800-145423000	Enhancers	Fetal Intestine Large	intestine
8	chr5:145418400-145422200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr5:145418400-145423400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr5:145418600-145420600	Weak transcription	Small Intestine	intestine
11	chr5:145418600-145420800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr5:145418600-145421000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:145418800-145420600	Enhancers	Liver	Liver
14	chr5:145418800-145420800	Enhancers	Fetal Intestine Small	intestine
15	chr5:145419000-145420600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:145419000-145421000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr5:145419000-145421000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr5:145419000-145421000	Genic enhancers	NHEK	skin
19	chr5:145419000-145422000	Enhancers	Hela-S3	cervix
20	chr5:145419000-145423400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:145419200-145422000	Enhancers	K562	blood
22	chr5:145419200-145423000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:145419200-145423400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:145419400-145423600	Enhancers	Stomach Mucosa	stomach
25	chr5:145419400-145423800	Enhancers	HMEC	breast
26	chr5:145419800-145421000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr5:145420000-145421000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr5:145420000-145421000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr5:145420000-145421000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr5:145420000-145421000	Enhancers	Right Ventricle	heart
31	chr5:145420000-145421200	Enhancers	Fetal Heart	heart
32	chr5:145420000-145421200	Enhancers	Left Ventricle	heart
33	chr5:145420000-145421200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr5:145420000-145423000	Enhancers	Colonic Mucosa	Colon
35	chr5:145420000-145423000	Enhancers	Esophagus	oesophagus
36	chr5:145420000-145423000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr5:145420200-145420600	Weak transcription	Gastric	stomach
38	chr5:145420200-145421000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr5:145420400-145421000	Enhancers	Right Atrium	heart
40	chr5:145420400-145421600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:145420400-145423000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:145420400-145423000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:145420400-145423000	Enhancers	Duodenum Mucosa	Duodenum

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