Variant report

Variant	rs6878379
Chromosome Location	chr5:88853148-88853149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16867725	1.00[EUR][1000 genomes]
rs16867731	1.00[EUR][1000 genomes]
rs16867735	1.00[EUR][1000 genomes]
rs16867737	1.00[EUR][1000 genomes]
rs6864306	1.00[EUR][1000 genomes]
rs6875048	1.00[EUR][1000 genomes]
rs6875289	1.00[EUR][1000 genomes]
rs6875893	1.00[EUR][1000 genomes]
rs7703511	1.00[EUR][1000 genomes]
rs7709961	1.00[EUR][1000 genomes]
rs7722957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830389	chr5:88669984-88860383	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88851800-88853200	Enhancers	NH-A	brain
2	chr5:88852000-88853200	Enhancers	HMEC	breast
3	chr5:88852000-88853800	Enhancers	Hela-S3	cervix
4	chr5:88852600-88853200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:88852600-88853400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:88852800-88856600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:88853000-88855800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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