The 2.0 version of rSNPBase

Variant report

Variant rs6878812
Chromosome Location chr5:60837070-60837071
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60767400-60837400 Weak transcription Spleen Spleen
2 chr5:60815800-60837200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr5:60816000-60837800 Weak transcription H9 Cell Line embryonic stem cell
4 chr5:60817000-60837400 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr5:60817800-60843800 Strong transcription HSMM muscle
6 chr5:60818000-60838000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
7 chr5:60818800-60837800 Weak transcription Fetal Heart heart
8 chr5:60819000-60837400 Weak transcription H1 Cell Line embryonic stem cell
9 chr5:60819000-60837800 Weak transcription Small Intestine intestine
10 chr5:60819200-60837800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr5:60819600-60837600 Weak transcription Brain Germinal Matrix brain
12 chr5:60822200-60837800 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr5:60822600-60837200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr5:60824400-60837800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr5:60824600-60839200 Strong transcription Fetal Intestine Large intestine
16 chr5:60824800-60838000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr5:60825200-60843000 Strong transcription HSMMtube muscle
18 chr5:60826400-60837200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr5:60826400-60838000 Weak transcription Psoas Muscle Psoas
20 chr5:60828800-60840200 Strong transcription Fetal Muscle Trunk muscle
21 chr5:60829400-60837800 Weak transcription Placenta Amnion Placenta Amnion
22 chr5:60829400-60838600 Strong transcription Osteobl bone
23 chr5:60829600-60837600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr5:60829800-60837200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr5:60829800-60837800 Strong transcription Liver Liver
26 chr5:60830000-60837400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr5:60830000-60838200 Strong transcription Adipose Nuclei Adipose
28 chr5:60830400-60838800 Strong transcription Duodenum Smooth Muscle Duodenum
29 chr5:60830600-60837800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr5:60830600-60839800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr5:60830600-60841400 Strong transcription Fetal Adrenal Gland Adrenal Gland
32 chr5:60830800-60843000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr5:60830800-60843600 Strong transcription Rectal Mucosa Donor 29 rectum
34 chr5:60831000-60837600 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr5:60831000-60837600 Weak transcription Dnd41 blood
36 chr5:60831200-60837200 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr5:60831200-60837200 Strong transcription Primary B cells from cord blood blood
38 chr5:60831200-60837400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr5:60831200-60837800 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr5:60831200-60838400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr5:60831200-60838400 Strong transcription Duodenum Mucosa Duodenum
42 chr5:60831200-60843000 Strong transcription Muscle Satellite Cultured Cells --
43 chr5:60831400-60837400 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr5:60831400-60837400 Strong transcription Fetal Lung lung
45 chr5:60831400-60840200 Strong transcription Primary T helper naive cells fromperipheralblood blood
46 chr5:60831400-60841200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr5:60831600-60837600 Weak transcription GM12878-XiMat blood
48 chr5:60831600-60838400 Strong transcription Primary neutrophils fromperipheralblood blood
49 chr5:60831600-60839400 Weak transcription HepG2 liver
50 chr5:60831600-60841200 Strong transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015