Variant report

Variant	rs6879436
Chromosome Location	chr5:111713922-111713923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6886398	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111704400-111726000	Weak transcription	Lung	lung
2	chr5:111705600-111714600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:111707400-111714600	Weak transcription	Ovary	ovary
4	chr5:111707400-111726000	Weak transcription	Pancreas	Pancrea
5	chr5:111708400-111725600	Weak transcription	Fetal Brain Male	brain
6	chr5:111709200-111725600	Weak transcription	Psoas Muscle	Psoas
7	chr5:111709200-111745400	Weak transcription	Esophagus	oesophagus
8	chr5:111710000-111715200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:111711000-111715200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:111711200-111715000	Weak transcription	Adipose Nuclei	Adipose
11	chr5:111711600-111714400	Weak transcription	Right Atrium	heart
12	chr5:111711800-111716400	Weak transcription	Left Ventricle	heart
13	chr5:111713200-111714200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:111713400-111714400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:111713400-111714600	Weak transcription	Right Ventricle	heart
16	chr5:111713400-111716600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:111713800-111718400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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