Variant report

Variant	rs6879453
Chromosome Location	chr5:95210686-95210687
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95209193..95210942-chr5:95216807..95218472,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6886595	1.00[AMR][1000 genomes]
rs6892621	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1019566	chr5:95180352-95300677	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95195200-95217400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:95201400-95212200	Weak transcription	Placenta	Placenta
3	chr5:95202000-95212600	Weak transcription	Gastric	stomach
4	chr5:95202800-95217200	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:95206600-95214200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:95206600-95218800	Weak transcription	HSMM	muscle
7	chr5:95206800-95214000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:95206800-95217400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:95207000-95213800	Weak transcription	Fetal Intestine Small	intestine
10	chr5:95207200-95213800	Weak transcription	GM12878-XiMat	blood
11	chr5:95207400-95218000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:95207400-95219000	Weak transcription	Psoas Muscle	Psoas
13	chr5:95208600-95214400	Weak transcription	Right Atrium	heart
14	chr5:95208800-95214000	Weak transcription	K562	blood
15	chr5:95208800-95217600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:95209600-95211000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr5:95209600-95212400	Weak transcription	Stomach Mucosa	stomach
18	chr5:95209600-95214000	Weak transcription	Fetal Intestine Large	intestine
19	chr5:95209800-95212000	Weak transcription	Liver	Liver
20	chr5:95210000-95210800	Enhancers	Fetal Heart	heart
21	chr5:95210200-95211600	Weak transcription	HepG2	liver
22	chr5:95210200-95220000	Weak transcription	Right Ventricle	heart
23	chr5:95210600-95221800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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