Variant report

Variant	rs6879709
Chromosome Location	chr5:116283650-116283651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs41417747	1.00[AMR][1000 genomes]
rs57211233	1.00[EUR][1000 genomes]
rs6892924	1.00[EUR][1000 genomes]
rs73258712	1.00[EUR][1000 genomes]
rs73264893	1.00[EUR][1000 genomes]
rs73266907	1.00[EUR][1000 genomes]
rs73266918	1.00[EUR][1000 genomes]
rs73782970	1.00[AMR][1000 genomes]
rs73782971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1020292	chr5:116183712-116349633	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv882750	chr5:116252792-116292091	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1017455	chr5:116261466-116302129	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116280000-116289600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:116280200-116289000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:116280200-116289200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:116280400-116286400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:116280600-116288600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:116281200-116288400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:116282400-116283800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr5:116282400-116289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:116283200-116284200	Enhancers	GM12878-XiMat	blood
10	chr5:116283400-116283800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr5:116283600-116283800	Enhancers	Gastric	stomach
12	chr5:116283600-116283800	Enhancers	HepG2	liver
13	chr5:116283600-116284000	Enhancers	Primary B cells from peripheral blood	blood
14	chr5:116283600-116284000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr5:116283600-116284000	Enhancers	Placenta	Placenta
16	chr5:116283600-116284000	Enhancers	Left Ventricle	heart
17	chr5:116283600-116285400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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