Variant report

Variant	rs6881073
Chromosome Location	chr5:178081189-178081190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10051137	0.81[EUR][1000 genomes]
rs10061455	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10061883	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10064009	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10070794	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10479501	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11740396	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11742564	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11744815	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11953546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12654185	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654187	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13187977	0.82[ASN][1000 genomes]
rs13360296	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4073633	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4077796	0.81[ASN][1000 genomes]
rs4079109	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4079111	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4079112	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4301240	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4413550	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4418123	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4437394	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4521498	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60509476	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6600942	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6869889	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6871074	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6874126	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73353860	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73353883	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7707891	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1023697	chr5:178070594-178126328	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537972	chr5:178070594-178126328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178079000-178082400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:178079000-178082400	Weak transcription	NHDF-Ad	bronchial
3	chr5:178079200-178082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:178079200-178082400	Weak transcription	Osteobl	bone

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