Variant report

Variant	rs6882045
Chromosome Location	chr5:89695444-89695445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:89694031..89696960-chr5:89697104..89699987,2	MCF-7	breast:
2	chr5:89686339..89688642-chr5:89694620..89696372,2	K562	blood:
3	chr5:89695237..89698064-chr5:89699685..89702781,3	K562	blood:
4	chr5:89674873..89677525-chr5:89695079..89696880,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10474326	0.89[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12109087	1.00[EUR][1000 genomes]
rs13355867	0.89[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13356310	0.89[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13361468	0.89[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868673	1.00[EUR][1000 genomes]
rs28489657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513348	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28604505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28710856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28869620	1.00[EUR][1000 genomes]
rs7730907	1.00[MEX][hapmap]
rs9293544	0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv882363	chr5:89643399-89725515	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89681600-89704600	Weak transcription	Aorta	Aorta
2	chr5:89683400-89703800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:89683600-89697600	Weak transcription	Left Ventricle	heart
4	chr5:89686000-89704400	Weak transcription	Psoas Muscle	Psoas
5	chr5:89686400-89704400	Weak transcription	Small Intestine	intestine
6	chr5:89686600-89704200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:89686800-89704400	Weak transcription	Fetal Kidney	kidney
8	chr5:89687000-89704400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:89687000-89704400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:89687000-89704600	Weak transcription	Fetal Stomach	stomach
11	chr5:89687200-89698200	Weak transcription	NHEK	skin
12	chr5:89687200-89698400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:89687200-89703000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:89687200-89704400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:89687200-89704400	Weak transcription	Thymus	Thymus
16	chr5:89687200-89704600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:89687200-89704600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:89687400-89699800	Weak transcription	HSMM	muscle
19	chr5:89687400-89702400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:89687400-89704600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:89687600-89697800	Weak transcription	Esophagus	oesophagus
22	chr5:89687600-89702400	Weak transcription	NH-A	brain
23	chr5:89688200-89695600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:89688200-89698200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:89688200-89702000	Weak transcription	Hela-S3	cervix
26	chr5:89688200-89704400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr5:89688400-89701800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:89688400-89702000	Weak transcription	Fetal Heart	heart
29	chr5:89688400-89702600	Weak transcription	A549	lung
30	chr5:89688400-89704400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr5:89688800-89700000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr5:89689000-89699000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:89689000-89702000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr5:89689000-89704400	Weak transcription	Fetal Muscle Leg	muscle
35	chr5:89689000-89704400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr5:89690000-89700800	Weak transcription	HepG2	liver
37	chr5:89690600-89704800	Weak transcription	Ovary	ovary
38	chr5:89691400-89704600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr5:89691800-89704600	Weak transcription	Fetal Brain Male	brain
40	chr5:89692000-89696000	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr5:89692000-89696000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:89692400-89700600	Weak transcription	Primary B cells from cord blood	blood
43	chr5:89692800-89695800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr5:89693000-89695800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:89693200-89702200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:89693200-89704400	Weak transcription	Colonic Mucosa	Colon
47	chr5:89693200-89704400	Weak transcription	Fetal Intestine Small	intestine
48	chr5:89693200-89704400	Weak transcription	Right Ventricle	heart
49	chr5:89693200-89704600	Weak transcription	Brain Germinal Matrix	brain
50	chr5:89693200-89704600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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