Variant report

Variant	rs6882215
Chromosome Location	chr5:57926857-57926858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16888492	1.00[ASW][hapmap]
rs6450488	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6868138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886323	1.00[AMR][1000 genomes]
rs6891883	1.00[AMR][1000 genomes]
rs7700521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57921000-57933000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:57924200-57927200	Enhancers	Fetal Intestine Large	intestine
3	chr5:57924200-57927200	Enhancers	Fetal Intestine Small	intestine
4	chr5:57924200-57928400	Enhancers	Stomach Mucosa	stomach
5	chr5:57925600-57927000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:57925600-57927000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr5:57926000-57927000	Weak transcription	Small Intestine	intestine
8	chr5:57926600-57928000	Enhancers	Pancreas	Pancrea
9	chr5:57926800-57927000	Enhancers	Gastric	stomach
10	chr5:57926800-57927200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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