Variant report

Variant	rs6882297
Chromosome Location	chr5:111749380-111749381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10515445	0.83[YRI][hapmap]
rs1524422	0.86[YRI][hapmap]
rs17134480	0.85[YRI][hapmap]
rs61367479	1.00[AMR][1000 genomes]
rs6891933	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111728800-111753600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:111730400-111753800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:111732000-111753400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:111734200-111753200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:111736000-111752400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:111738400-111752400	Weak transcription	Fetal Brain Female	brain
7	chr5:111740400-111751400	Weak transcription	Ovary	ovary
8	chr5:111743200-111753400	Weak transcription	Placenta	Placenta
9	chr5:111743600-111753400	Weak transcription	Brain Substantia Nigra	brain
10	chr5:111744200-111752600	Weak transcription	Hela-S3	cervix
11	chr5:111745200-111749400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:111746200-111753400	Weak transcription	Right Ventricle	heart
13	chr5:111746600-111753800	Weak transcription	Spleen	Spleen
14	chr5:111747400-111749600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:111747400-111749600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:111747600-111749800	Enhancers	NHEK	skin
17	chr5:111747600-111750400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:111748000-111750000	Weak transcription	Adipose Nuclei	Adipose
19	chr5:111748000-111751200	Enhancers	Fetal Heart	heart
20	chr5:111748000-111752000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:111748000-111753600	Weak transcription	Pancreas	Pancrea
22	chr5:111748000-111754200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:111748200-111750600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:111748200-111753400	Weak transcription	Fetal Lung	lung
25	chr5:111748600-111750800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:111748600-111753600	Weak transcription	Left Ventricle	heart
27	chr5:111748800-111749800	Enhancers	HUVEC	blood vessel
28	chr5:111749200-111749400	ZNF genes & repeats	Aorta	Aorta
29	chr5:111749200-111749400	Enhancers	Fetal Kidney	kidney
30	chr5:111749200-111749400	Genic enhancers	Lung	lung
31	chr5:111749200-111749600	Enhancers	Esophagus	oesophagus
32	chr5:111749200-111749600	Enhancers	Gastric	stomach
33	chr5:111749200-111749600	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr5:111749200-111749800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:111749200-111749800	Enhancers	Psoas Muscle	Psoas
36	chr5:111749200-111750400	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links