Variant report

Variant	rs6882872
Chromosome Location	chr5:167726313-167726314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167723928..167726382-chr5:167728525..167730726,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12655262	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1422424	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2253028	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279698	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4976589	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4976590	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59111838	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6555791	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv5119	chr5:167724987-167766076	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167720600-167727000	Weak transcription	GM12878-XiMat	blood
2	chr5:167722800-167729200	Weak transcription	Esophagus	oesophagus
3	chr5:167723000-167726600	Weak transcription	HSMM	muscle
4	chr5:167723000-167727200	Weak transcription	HSMMtube	muscle
5	chr5:167723000-167728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:167723000-167728800	Weak transcription	Adipose Nuclei	Adipose
7	chr5:167723000-167728800	Weak transcription	NHDF-Ad	bronchial
8	chr5:167723000-167729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:167723000-167730400	Weak transcription	Lung	lung
10	chr5:167723200-167726400	Weak transcription	Fetal Brain Male	brain
11	chr5:167723200-167726800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:167723200-167727400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:167723400-167726600	Weak transcription	NH-A	brain
14	chr5:167723400-167728800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:167723400-167728800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:167723400-167728800	Weak transcription	Fetal Heart	heart
17	chr5:167723400-167728800	Weak transcription	Osteobl	bone
18	chr5:167723600-167726800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:167723600-167728600	Weak transcription	Fetal Intestine Large	intestine
20	chr5:167723800-167726400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:167724000-167726800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:167724000-167726800	Weak transcription	HMEC	breast
23	chr5:167724000-167727200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:167724000-167728000	Weak transcription	Fetal Intestine Small	intestine
25	chr5:167724000-167728800	Weak transcription	HepG2	liver
26	chr5:167724200-167726400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:167724200-167726800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:167724200-167727000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:167724200-167729000	Weak transcription	Fetal Kidney	kidney
30	chr5:167724200-167731600	Weak transcription	Liver	Liver
31	chr5:167724200-167733200	Weak transcription	Placenta	Placenta
32	chr5:167724400-167726400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:167724400-167726600	Weak transcription	Gastric	stomach
34	chr5:167725200-167729800	Enhancers	Pancreas	Pancrea
35	chr5:167726000-167726400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:167726000-167726600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr5:167726000-167726600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr5:167726000-167727000	Enhancers	Brain Anterior Caudate	brain
39	chr5:167726000-167727200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:167726000-167727400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr5:167726000-167727600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr5:167726000-167728000	Enhancers	Brain Cingulate Gyrus	brain
43	chr5:167726000-167729400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:167726000-167729400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr5:167726000-167730600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr5:167726000-167730800	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr5:167726200-167726400	Enhancers	Stomach Mucosa	stomach
48	chr5:167726200-167726800	Enhancers	Brain Substantia Nigra	brain
49	chr5:167726200-167726800	Enhancers	Fetal Lung	lung
50	chr5:167726200-167726800	Transcr. at gene 5' and 3'	A549	lung

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