Variant report

Variant	rs6883728
Chromosome Location	chr5:89278741-89278742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10044667	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10068046	0.91[ASN][1000 genomes]
rs10805864	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10942581	0.81[ASN][1000 genomes]
rs12517492	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12519494	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13362216	0.98[ASN][1000 genomes]
rs154193	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1560208	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs157306	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs157311	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs157559	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs157560	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs166820	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17589076	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs175965	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs280671	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60448814	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs662339	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6862722	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6871792	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs690558	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702845	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs818944	0.81[ASN][1000 genomes]
rs818945	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs818948	0.81[ASN][1000 genomes]
rs9293534	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	esv3438759	chr5:89276596-89281994	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3446012	chr5:89277896-89281194	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89276600-89278800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:89278600-89278800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:89278600-89279400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:89278600-89283200	Weak transcription	NHDF-Ad	bronchial

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