The 2.0 version of rSNPBase

Variant report

Variant rs6883820
Chromosome Location chr5:115849803-115849804
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115813800-115851000 Weak transcription Liver Liver
2 chr5:115814000-115850200 Weak transcription Small Intestine intestine
3 chr5:115828200-115865400 Weak transcription Primary T cells from cord blood blood
4 chr5:115831200-115851400 Weak transcription HepG2 liver
5 chr5:115831400-115851800 Weak transcription Primary hematopoietic stem cells blood
6 chr5:115835000-115851600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr5:115838400-115850800 Weak transcription Duodenum Mucosa Duodenum
8 chr5:115839000-115855600 Weak transcription Left Ventricle heart
9 chr5:115839000-115856400 Weak transcription HSMMtube muscle
10 chr5:115839600-115859800 Weak transcription Colonic Mucosa Colon
11 chr5:115839800-115856400 Weak transcription Fetal Muscle Trunk muscle
12 chr5:115840600-115853800 Weak transcription Placenta Placenta
13 chr5:115841600-115858000 Enhancers iPS-15b Cell Line embryonic stem cell
14 chr5:115843400-115850200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr5:115843400-115850400 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr5:115843400-115850600 Weak transcription Fetal Kidney kidney
17 chr5:115843600-115850200 Weak transcription Fetal Brain Female brain
18 chr5:115844200-115850200 Weak transcription Fetal Stomach stomach
19 chr5:115844200-115851400 Weak transcription Rectal Smooth Muscle rectum
20 chr5:115844800-115853400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr5:115845800-115850200 Weak transcription Brain Cingulate Gyrus brain
22 chr5:115845800-115850400 Weak transcription Right Atrium heart
23 chr5:115845800-115853400 Weak transcription Lung lung
24 chr5:115845800-115853600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr5:115845800-115856800 Weak transcription Pancreas Pancrea
26 chr5:115845800-115867200 Weak transcription Right Ventricle heart
27 chr5:115846200-115850200 Weak transcription Brain Anterior Caudate brain
28 chr5:115846200-115855600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr5:115846400-115852600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr5:115846600-115850200 Weak transcription Ovary ovary
31 chr5:115846600-115850400 Weak transcription Brain Inferior Temporal Lobe brain
32 chr5:115846800-115852400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr5:115847200-115851400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr5:115847200-115859800 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr5:115847400-115852600 Weak transcription ES-WA7 Cell Line embryonic stem cell
36 chr5:115847400-115852600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr5:115847400-115852600 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr5:115847600-115850400 Weak transcription Brain Angular Gyrus brain
39 chr5:115847800-115850600 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr5:115847800-115853400 Weak transcription H9 Cell Line embryonic stem cell
41 chr5:115847800-115856800 Weak transcription Psoas Muscle Psoas
42 chr5:115848000-115850200 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr5:115848000-115850200 Weak transcription Stomach Smooth Muscle stomach
44 chr5:115848000-115850600 Weak transcription Fetal Lung lung
45 chr5:115848000-115853400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr5:115848200-115850200 Weak transcription Colon Smooth Muscle Colon
47 chr5:115848200-115854000 Weak transcription Rectal Mucosa Donor 31 rectum
48 chr5:115848400-115851000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr5:115848600-115850200 Weak transcription Brain Substantia Nigra brain
50 chr5:115848600-115850400 Weak transcription Brain Hippocampus Middle brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015