Variant report

Variant	rs6885207
Chromosome Location	chr5:76145235-76145236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr5:76145166-76146690	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:76144979..76147946-chr5:76325039..76327688,2	K562	blood:

Variant related genes	Relation type
S100Z	TF binding region
ENSG00000164252	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2460507	0.81[CEU][hapmap];0.98[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs4704369	0.87[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2762526	chr5:76134777-76153934	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76132200-76145800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:76135400-76145600	Weak transcription	Gastric	stomach
3	chr5:76136000-76146400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:76140600-76145800	Weak transcription	Adipose Nuclei	Adipose
5	chr5:76142600-76145800	Weak transcription	Right Atrium	heart
6	chr5:76143200-76145800	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:76143200-76145800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:76143600-76145600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:76144400-76150600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:76144800-76148200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:76145000-76145600	Enhancers	Fetal Thymus	thymus
12	chr5:76145000-76145800	Enhancers	Primary T cells from cord blood	blood
13	chr5:76145000-76148000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr5:76145000-76148200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:76145000-76148400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:76145000-76148800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:76145000-76149000	Enhancers	Duodenum Mucosa	Duodenum
18	chr5:76145200-76146600	Flanking Active TSS	K562	blood
19	chr5:76145200-76147400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr5:76145200-76147400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr5:76145200-76147600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:76145200-76147600	Enhancers	Fetal Intestine Small	intestine
23	chr5:76145200-76148000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr5:76145200-76148000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr5:76145200-76148400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr5:76145200-76148600	Enhancers	Primary B cells from peripheral blood	blood
27	chr5:76145200-76149000	Enhancers	Fetal Intestine Large	intestine
28	chr5:76145200-76149200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr5:76145200-76153400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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