Variant report

Variant	rs6885572
Chromosome Location	chr5:43927520-43927521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35730404	0.86[AFR][1000 genomes]
rs36030354	0.90[AFR][1000 genomes]
rs72762400	0.86[EUR][1000 genomes]
rs72762401	0.86[EUR][1000 genomes]
rs72764204	0.86[EUR][1000 genomes]
rs73753694	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1009911	chr5:43918274-43929639	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43926800-43927600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:43926800-43927600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:43926800-43928000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:43927200-43927800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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