Variant report

Variant	rs6885774
Chromosome Location	chr5:167643722-167643723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167638699..167640439-chr5:167642753..167644819,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10045434	1.00[EUR][1000 genomes]
rs1541660	1.00[MEX][hapmap]
rs17069944	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2569038	1.00[EUR][1000 genomes]
rs6885116	0.83[ASW][hapmap];0.89[LWK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs750850	1.00[EUR][1000 genomes]
rs9986122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600255	chr5:167622534-167651603	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
2	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
3	chr5:167621400-167657600	Weak transcription	Fetal Brain Female	brain
4	chr5:167621800-167646400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:167624600-167646600	Weak transcription	Liver	Liver
6	chr5:167634800-167646400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167635200-167645200	Weak transcription	HMEC	breast
8	chr5:167635200-167645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:167635200-167646000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:167636400-167646600	Strong transcription	NHEK	skin
11	chr5:167637000-167645200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:167637000-167646200	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:167637200-167644600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:167637200-167646000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:167637200-167646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:167637200-167646400	Weak transcription	Brain Angular Gyrus	brain
17	chr5:167637200-167646400	Weak transcription	Brain Anterior Caudate	brain
18	chr5:167637200-167646400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr5:167637200-167646600	Weak transcription	Fetal Brain Male	brain
20	chr5:167637200-167646600	Weak transcription	NH-A	brain
21	chr5:167637800-167646600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:167639000-167646400	Weak transcription	Fetal Lung	lung
23	chr5:167639400-167646200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:167639400-167653200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:167640800-167644200	Strong transcription	Right Ventricle	heart
26	chr5:167641200-167646600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:167642000-167646200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:167642200-167644000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:167642600-167644000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:167642800-167643800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr5:167642800-167643800	Enhancers	Adipose Nuclei	Adipose
32	chr5:167642800-167644000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr5:167642800-167644000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr5:167642800-167644000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr5:167642800-167644000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:167642800-167644400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr5:167643000-167644000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr5:167643000-167644000	Enhancers	H9 Cell Line	embryonic stem cell
39	chr5:167643000-167644000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr5:167643000-167646400	Weak transcription	HSMM	muscle
41	chr5:167643200-167643800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr5:167643200-167644000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:167643200-167646600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:167643400-167643800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:167643400-167643800	Weak transcription	Lung	lung
46	chr5:167643400-167644000	Genic enhancers	Left Ventricle	heart
47	chr5:167643400-167646200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr5:167643400-167650200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr5:167643600-167643800	Enhancers	Spleen	Spleen
50	chr5:167643600-167644600	Enhancers	Fetal Stomach	stomach

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