The 2.0 version of rSNPBase

Variant report

Variant rs6886244
Chromosome Location chr5:43443292-43443293
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43426400-43443600 Weak transcription Esophagus oesophagus
2 chr5:43429400-43460200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:43433200-43454400 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr5:43433200-43460200 Weak transcription NHLF lung
5 chr5:43433400-43443600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr5:43433400-43456000 Weak transcription Brain Hippocampus Middle brain
7 chr5:43433600-43443400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr5:43433600-43452200 Weak transcription Osteobl bone
9 chr5:43433800-43483400 Weak transcription Gastric stomach
10 chr5:43436200-43443600 Weak transcription Fetal Lung lung
11 chr5:43436800-43443600 Weak transcription Thymus Thymus
12 chr5:43438400-43451000 Weak transcription HepG2 liver
13 chr5:43438600-43443800 Weak transcription Lung lung
14 chr5:43438800-43460600 Weak transcription NH-A brain
15 chr5:43440000-43462400 Weak transcription Colonic Mucosa Colon
16 chr5:43440800-43443400 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr5:43440800-43443400 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr5:43440800-43444000 Weak transcription Small Intestine intestine
19 chr5:43440800-43466400 Weak transcription Colon Smooth Muscle Colon
20 chr5:43440800-43466800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr5:43441000-43443600 Weak transcription Rectal Smooth Muscle rectum
22 chr5:43441200-43443400 Weak transcription Primary hematopoietic stem cells blood
23 chr5:43441200-43443600 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr5:43441400-43443400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr5:43441600-43466600 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr5:43441800-43445000 Weak transcription HSMM muscle
27 chr5:43441800-43461000 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr5:43442000-43443400 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr5:43442000-43453400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr5:43442000-43460000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr5:43442400-43443600 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr5:43442600-43443400 Weak transcription Muscle Satellite Cultured Cells --
33 chr5:43442600-43443400 Weak transcription HSMMtube muscle
34 chr5:43442600-43443600 Weak transcription Fetal Kidney kidney
35 chr5:43442600-43445000 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr5:43442600-43446200 Weak transcription Fetal Brain Male brain
37 chr5:43442800-43443400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr5:43442800-43443400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr5:43442800-43443600 Weak transcription NHEK skin
40 chr5:43443000-43443600 Weak transcription K562 blood
41 chr5:43443000-43448400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr5:43443200-43443600 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr5:43443200-43443600 Weak transcription Stomach Smooth Muscle stomach
44 chr5:43443200-43443600 Weak transcription GM12878-XiMat blood
45 chr5:43443200-43444000 ZNF genes & repeats Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015