Variant report

Variant	rs6886303
Chromosome Location	chr5:42568328-42568329
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:42557269..42559251-chr5:42568041..42570943,2	MCF-7	breast:
2	chr5:42555037..42556788-chr5:42566881..42568927,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6874738	1.00[AMR][1000 genomes]
rs6890032	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42565000-42568400	Enhancers	Fetal Muscle Leg	muscle
2	chr5:42565200-42568400	Enhancers	Fetal Stomach	stomach
3	chr5:42565400-42568800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:42565800-42570200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:42565800-42571000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:42566000-42571000	Weak transcription	HMEC	breast
7	chr5:42566000-42571200	Weak transcription	Psoas Muscle	Psoas
8	chr5:42566000-42576200	Weak transcription	Spleen	Spleen
9	chr5:42566200-42571000	Weak transcription	NHEK	skin
10	chr5:42566200-42571200	Weak transcription	Left Ventricle	heart
11	chr5:42566600-42568400	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr5:42566600-42568600	Enhancers	Liver	Liver
13	chr5:42566800-42571000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:42567400-42568400	Enhancers	Ovary	ovary
15	chr5:42567400-42571200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:42567600-42568400	Enhancers	Right Atrium	heart
17	chr5:42567600-42568400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr5:42567600-42568400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr5:42567600-42570800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:42567600-42571200	Weak transcription	Aorta	Aorta
21	chr5:42567800-42568400	Enhancers	Right Ventricle	heart
22	chr5:42567800-42568800	Enhancers	Fetal Lung	lung
23	chr5:42567800-42571000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:42568000-42568600	Enhancers	Fetal Heart	heart
25	chr5:42568000-42568800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:42568000-42568800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:42568000-42571200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:42568000-42571400	Weak transcription	Adipose Nuclei	Adipose
29	chr5:42568000-42571400	Weak transcription	HSMMtube	muscle
30	chr5:42568000-42579400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:42568000-42581400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr5:42568000-42582200	Weak transcription	Fetal Intestine Small	intestine
33	chr5:42568200-42568800	Enhancers	Fetal Intestine Large	intestine

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