Variant report

Variant	rs6886866
Chromosome Location	chr5:5335192-5335193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16875378	1.00[EUR][1000 genomes]
rs16875474	1.00[EUR][1000 genomes]
rs16875503	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5321600-5335800	Weak transcription	Fetal Kidney	kidney
2	chr5:5327200-5336200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:5327400-5339800	Weak transcription	Ovary	ovary
4	chr5:5331200-5335800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:5331200-5340400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:5331400-5339800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:5331600-5335800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:5332000-5339800	Weak transcription	Lung	lung
9	chr5:5332200-5335800	Weak transcription	Liver	Liver
10	chr5:5332400-5335600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:5332600-5335800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:5332600-5340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:5332800-5335800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:5332800-5336000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:5332800-5339400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:5333000-5335200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:5333000-5335800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr5:5333000-5336000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:5333000-5336200	Weak transcription	HSMMtube	muscle
20	chr5:5333000-5340800	Weak transcription	Psoas Muscle	Psoas
21	chr5:5333200-5336000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:5333200-5339800	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:5333400-5335400	Weak transcription	HepG2	liver
24	chr5:5333800-5340200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:5334000-5335200	Enhancers	Hela-S3	cervix
26	chr5:5334000-5337000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:5334600-5335400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:5334800-5336200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:5334800-5337000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr5:5334800-5337200	Enhancers	Osteobl	bone
31	chr5:5334800-5337600	Enhancers	NH-A	brain
32	chr5:5335000-5335800	Flanking Active TSS	A549	lung
33	chr5:5335000-5336800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:5335000-5337400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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