The 2.0 version of rSNPBase

Variant report

Variant rs6887174
Chromosome Location chr5:40740046-40740047
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40692400-40741200 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:40709600-40745000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr5:40712800-40741200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr5:40713200-40740600 Weak transcription Right Ventricle heart
5 chr5:40721400-40741400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr5:40721800-40740600 Weak transcription Fetal Brain Male brain
7 chr5:40722800-40741400 Weak transcription Aorta Aorta
8 chr5:40722800-40755200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr5:40723000-40741600 Weak transcription Lung lung
10 chr5:40724200-40740600 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr5:40724600-40740800 Weak transcription Fetal Muscle Trunk muscle
12 chr5:40724800-40740600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr5:40728200-40745600 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr5:40728600-40740400 Weak transcription Fetal Thymus thymus
15 chr5:40728600-40741200 Weak transcription Fetal Stomach stomach
16 chr5:40728800-40741200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr5:40729000-40741400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr5:40729200-40741400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr5:40734200-40740800 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr5:40734200-40741600 Weak transcription Psoas Muscle Psoas
21 chr5:40734400-40740600 Weak transcription Primary T cells fromperipheralblood blood
22 chr5:40734400-40741400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr5:40734800-40740600 Weak transcription Stomach Smooth Muscle stomach
24 chr5:40735000-40740400 Weak transcription Colonic Mucosa Colon
25 chr5:40735000-40741400 Weak transcription Rectal Smooth Muscle rectum
26 chr5:40735200-40740200 Weak transcription Fetal Kidney kidney
27 chr5:40735400-40740600 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr5:40735400-40740800 Weak transcription Adipose Nuclei Adipose
29 chr5:40735400-40741400 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr5:40736000-40740200 Weak transcription Hela-S3 cervix
31 chr5:40736000-40740600 Weak transcription Ovary ovary
32 chr5:40736000-40740600 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr5:40736000-40740600 Weak transcription Spleen Spleen
34 chr5:40736000-40741600 Weak transcription HepG2 liver
35 chr5:40736000-40747200 Weak transcription HMEC breast
36 chr5:40736000-40755200 Weak transcription Pancreas Pancrea
37 chr5:40736200-40740800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr5:40736200-40754200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr5:40736400-40740800 Weak transcription Colon Smooth Muscle Colon
40 chr5:40736400-40740800 Weak transcription NH-A brain
41 chr5:40736400-40741200 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr5:40736400-40746400 Weak transcription Muscle Satellite Cultured Cells --
43 chr5:40736400-40747000 Weak transcription Small Intestine intestine
44 chr5:40736400-40753800 Weak transcription Fetal Heart heart
45 chr5:40736400-40754200 Weak transcription Gastric stomach
46 chr5:40736400-40754200 Weak transcription NHLF lung
47 chr5:40736600-40740600 Weak transcription Brain Cingulate Gyrus brain
48 chr5:40736600-40740600 Weak transcription Brain Inferior Temporal Lobe brain
49 chr5:40736600-40740600 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr5:40736600-40741200 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015