The 2.0 version of rSNPBase

Variant report

Variant rs6887873
Chromosome Location chr5:79268635-79268636
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79259200-79270800 Weak transcription Fetal Muscle Trunk muscle
2 chr5:79259400-79269200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr5:79259400-79271400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr5:79259400-79272800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr5:79260600-79286200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr5:79263200-79273200 Weak transcription Psoas Muscle Psoas
7 chr5:79263600-79269000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr5:79265800-79270800 Weak transcription Left Ventricle heart
9 chr5:79266600-79271000 Weak transcription Duodenum Mucosa Duodenum
10 chr5:79267000-79270400 Weak transcription Adipose Nuclei Adipose
11 chr5:79267000-79271000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr5:79267200-79270600 Weak transcription Osteobl bone
13 chr5:79267400-79269000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr5:79267400-79269400 Weak transcription HSMM muscle
15 chr5:79267400-79269400 Weak transcription NH-A brain
16 chr5:79267400-79270000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr5:79267400-79270000 Weak transcription HMEC breast
18 chr5:79267400-79270400 Weak transcription Muscle Satellite Cultured Cells --
19 chr5:79267400-79270400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr5:79267400-79270800 Weak transcription HUVEC blood vessel
21 chr5:79267400-79271000 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr5:79267400-79271600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr5:79267400-79272600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr5:79267400-79272800 Weak transcription Fetal Brain Female brain
25 chr5:79267600-79269800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr5:79267600-79269800 Weak transcription NHEK skin
27 chr5:79267600-79269800 Weak transcription NHLF lung
28 chr5:79267600-79272600 Weak transcription Primary B cells from peripheral blood blood
29 chr5:79267600-79273000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr5:79267800-79269200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr5:79267800-79269400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:79267800-79269400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr5:79267800-79273600 Weak transcription Stomach Smooth Muscle stomach
34 chr5:79268000-79270800 Weak transcription Liver Liver
35 chr5:79268000-79271000 Weak transcription Primary hematopoietic stem cells blood
36 chr5:79268000-79271200 Weak transcription Fetal Muscle Leg muscle
37 chr5:79268000-79273000 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr5:79268000-79273000 Weak transcription Fetal Intestine Large intestine
39 chr5:79268000-79273800 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr5:79268200-79271600 Enhancers NHDF-Ad bronchial
41 chr5:79268200-79273000 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr5:79268200-79273000 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr5:79268200-79273000 Weak transcription GM12878-XiMat blood
44 chr5:79268400-79270000 Weak transcription Primary B cells from cord blood blood
45 chr5:79268400-79270800 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr5:79268400-79270800 Weak transcription Primary T cells from cord blood blood
47 chr5:79268400-79273600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr5:79268600-79271000 Weak transcription Fetal Thymus thymus
49 chr5:79268600-79271200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr5:79268600-79273000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015