Variant report

Variant	rs6888428
Chromosome Location	chr5:75694592-75694593
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10942768	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4314381	0.82[EUR][1000 genomes]
rs4496694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874833	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888419	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293683	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75685200-75697400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:75685200-75697600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:75689000-75697400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:75689200-75696800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:75689200-75698200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:75689400-75697600	Weak transcription	K562	blood
7	chr5:75691200-75696400	Weak transcription	HepG2	liver
8	chr5:75691200-75696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr5:75691200-75697000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:75691400-75696800	Weak transcription	Primary T cells from cord blood	blood
11	chr5:75691400-75696800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr5:75692800-75697000	Weak transcription	Placenta	Placenta
13	chr5:75693000-75696000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:75693000-75696400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:75693400-75696200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:75694400-75694600	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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