Variant report

Variant rs6888580
Chromosome Location chr5:115871408-115871409
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115858400-115873600 Enhancers iPS-15b Cell Line embryonic stem cell
2 chr5:115860000-115872000 Enhancers HUES48 Cell Line embryonic stem cell
3 chr5:115860000-115872200 Enhancers HepG2 liver
4 chr5:115864600-115871600 Enhancers Fetal Intestine Small intestine
5 chr5:115864600-115872200 Weak transcription Fetal Brain Male brain
6 chr5:115864800-115872000 Enhancers Brain Substantia Nigra brain
7 chr5:115865600-115871600 Weak transcription Brain Germinal Matrix brain
8 chr5:115866400-115873200 Enhancers Fetal Muscle Leg muscle
9 chr5:115867400-115872000 Enhancers H1 Cell Line embryonic stem cell
10 chr5:115867400-115872000 Enhancers HUES64 Cell Line embryonic stem cell
11 chr5:115867600-115873200 Enhancers Colon Smooth Muscle Colon
12 chr5:115868000-115872800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr5:115868000-115873200 Enhancers Stomach Smooth Muscle stomach
14 chr5:115868200-115872000 Enhancers Brain Angular Gyrus brain
15 chr5:115868200-115873200 Enhancers Fetal Adrenal Gland Adrenal Gland
16 chr5:115868400-115871600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
17 chr5:115868400-115871800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
18 chr5:115868400-115871800 Enhancers Brain Hippocampus Middle brain
19 chr5:115868400-115873000 Enhancers Fetal Lung lung
20 chr5:115868600-115871600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
21 chr5:115868600-115871800 Enhancers Cortex derived primary cultured neurospheres brain
22 chr5:115868600-115871800 Enhancers Brain Cingulate Gyrus brain
23 chr5:115868600-115876000 Weak transcription Psoas Muscle Psoas
24 chr5:115868800-115872200 Weak transcription Fetal Brain Female brain
25 chr5:115868800-115872200 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr5:115869000-115873400 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr5:115869200-115872000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr5:115869200-115873200 Weak transcription Fetal Heart heart
29 chr5:115869600-115871800 Weak transcription Fetal Stomach stomach
30 chr5:115869600-115875200 Genic enhancers iPS-20b Cell Line embryonic stem cell
31 chr5:115870200-115871600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
32 chr5:115870200-115872000 Enhancers Brain Anterior Caudate brain
33 chr5:115870200-115872200 Weak transcription Rectal Smooth Muscle rectum
34 chr5:115870200-115872400 Genic enhancers ES-I3 Cell Line embryonic stem cell
35 chr5:115870200-115872600 Weak transcription Fetal Kidney kidney
36 chr5:115870200-115873000 Weak transcription Gastric stomach
37 chr5:115870400-115872200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr5:115870400-115873200 Enhancers Duodenum Smooth Muscle Duodenum
39 chr5:115870600-115873200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr5:115870800-115871800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr5:115871000-115871800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr5:115871000-115871800 Weak transcription Colonic Mucosa Colon
43 chr5:115871000-115871800 Enhancers Rectal Mucosa Donor 31 rectum
44 chr5:115871000-115871800 Weak transcription Right Atrium heart
45 chr5:115871000-115872000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
46 chr5:115871000-115872200 Active TSS Placenta Placenta
47 chr5:115871000-115872200 Weak transcription Left Ventricle heart
48 chr5:115871000-115872200 Weak transcription Lung lung
49 chr5:115871000-115872400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr5:115871000-115872600 Enhancers H9 Cell Line embryonic stem cell

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