The 2.0 version of rSNPBase

Variant report

Variant rs6888776
Chromosome Location chr5:127366038-127366039
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127328200-127379800 Weak transcription Esophagus oesophagus
2 chr5:127332400-127388800 Weak transcription Aorta Aorta
3 chr5:127333600-127388800 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr5:127333600-127417800 Weak transcription Pancreas Pancrea
5 chr5:127333800-127370800 Weak transcription Rectal Smooth Muscle rectum
6 chr5:127334600-127394000 Weak transcription Lung lung
7 chr5:127335000-127397600 Weak transcription NHDF-Ad bronchial
8 chr5:127336800-127375000 Weak transcription Primary T cells fromperipheralblood blood
9 chr5:127343000-127380000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr5:127345600-127371400 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr5:127351000-127372800 Weak transcription Brain Angular Gyrus brain
12 chr5:127352000-127372800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr5:127352200-127366400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr5:127353200-127397000 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr5:127354000-127397400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr5:127354400-127398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr5:127354600-127372600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr5:127354600-127409800 Weak transcription Left Ventricle heart
19 chr5:127354800-127379800 Weak transcription Fetal Stomach stomach
20 chr5:127356000-127366200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr5:127356000-127372600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr5:127356200-127399200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr5:127356400-127379600 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr5:127356400-127414000 Weak transcription Primary T helper naive cells fromperipheralblood blood
25 chr5:127357200-127373800 Weak transcription NH-A brain
26 chr5:127357200-127393800 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr5:127358000-127368800 Weak transcription Osteobl bone
28 chr5:127358000-127378400 Weak transcription NHLF lung
29 chr5:127358800-127372600 Weak transcription HMEC breast
30 chr5:127358800-127389000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr5:127359000-127369000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr5:127359600-127368800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr5:127359600-127374000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr5:127359600-127376400 Weak transcription Ovary ovary
35 chr5:127359800-127370800 Weak transcription A549 lung
36 chr5:127360400-127372800 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr5:127360400-127393800 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr5:127365600-127366400 ZNF genes & repeats Dnd41 blood
39 chr5:127365600-127367000 ZNF genes & repeats Primary hematopoietic stem cells blood
40 chr5:127365600-127367000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr5:127365600-127367400 ZNF genes & repeats Primary B cells from cord blood blood
42 chr5:127365600-127367400 ZNF genes & repeats Primary B cells from peripheral blood blood
43 chr5:127365800-127366400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr5:127365800-127366600 ZNF genes & repeats Fetal Muscle Leg muscle
45 chr5:127365800-127367200 Strong transcription Primary T cells from cord blood blood
46 chr5:127366000-127366600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr5:127366000-127371400 Weak transcription Muscle Satellite Cultured Cells --
48 chr5:127366000-127374000 Weak transcription Duodenum Mucosa Duodenum
49 chr5:127366000-127389000 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015