Variant report

Variant	rs6889515
Chromosome Location	chr5:75665311-75665312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61101813	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75660200-75667800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:75660200-75667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:75660200-75668000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:75660400-75666200	Enhancers	K562	blood
5	chr5:75660400-75667800	Weak transcription	HepG2	liver
6	chr5:75660400-75668000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr5:75663000-75667800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:75663800-75668200	Weak transcription	Spleen	Spleen
9	chr5:75664000-75667800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:75664200-75667800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:75664200-75667800	Weak transcription	NHEK	skin
12	chr5:75664200-75668000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:75664400-75667200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:75664400-75667800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:75664400-75668000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:75664800-75665400	Enhancers	A549	lung
17	chr5:75665000-75667200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:75665000-75667400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:75665000-75667800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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