Variant report

Variant	rs6889986
Chromosome Location	chr5:90207399-90207400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90205974..90208499-chr5:90214592..90217001,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10035307	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10045202	0.81[EUR][1000 genomes]
rs2367181	0.90[ASN][1000 genomes]
rs28368305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3105793	0.88[ASN][1000 genomes]
rs34088804	0.96[ASN][1000 genomes]
rs4244205	0.81[EUR][1000 genomes]
rs4496735	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4580808	0.82[EUR][1000 genomes]
rs4637585	0.81[EUR][1000 genomes]
rs4916831	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916833	0.81[ASN][1000 genomes]
rs57190680	0.98[ASN][1000 genomes]
rs61424527	0.95[ASN][1000 genomes]
rs62374016	0.96[ASN][1000 genomes]
rs6858917	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6868618	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882367	chr5:89956991-90209824	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv2754394	chr5:90181320-90225796	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90185000-90226600	Weak transcription	K562	blood
2	chr5:90186400-90218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:90204600-90208200	Enhancers	HepG2	liver
4	chr5:90204800-90208800	Enhancers	A549	lung
5	chr5:90205000-90225000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:90205200-90210200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:90205200-90210600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:90205200-90217600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:90205200-90219200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:90205400-90207800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:90206000-90207600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:90206000-90208200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:90206200-90211200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:90206200-90211200	Weak transcription	Fetal Kidney	kidney
15	chr5:90206600-90208000	Enhancers	Liver	Liver
16	chr5:90206800-90207400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:90206800-90208000	Enhancers	Brain Anterior Caudate	brain
18	chr5:90206800-90208000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr5:90207000-90207400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:90207000-90207800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr5:90207000-90208200	Enhancers	Ovary	ovary
22	chr5:90207200-90208600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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