Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12513537	0.82[EUR][1000 genomes]
rs12513566	0.82[EUR][1000 genomes]
rs12514125	0.82[EUR][1000 genomes]
rs12515776	0.82[EUR][1000 genomes]
rs12519317	0.82[EUR][1000 genomes]
rs12520143	0.82[EUR][1000 genomes]
rs12520993	0.82[EUR][1000 genomes]
rs12521453	0.82[EUR][1000 genomes]
rs12521636	0.82[EUR][1000 genomes]
rs12521647	0.82[EUR][1000 genomes]
rs13156511	0.82[EUR][1000 genomes]
rs13175006	0.82[EUR][1000 genomes]
rs338847	0.81[AMR][1000 genomes]
rs34450595	0.82[EUR][1000 genomes]
rs34522168	0.82[EUR][1000 genomes]
rs34844054	0.82[EUR][1000 genomes]
rs35060773	0.82[EUR][1000 genomes]
rs35205874	0.82[EUR][1000 genomes]
rs35416462	0.82[EUR][1000 genomes]
rs36073750	0.84[EUR][1000 genomes]
rs4270741	0.82[EUR][1000 genomes]
rs4455609	0.81[EUR][1000 genomes]
rs4957648	0.82[EUR][1000 genomes]
rs4957649	0.82[EUR][1000 genomes]
rs4958057	0.82[EUR][1000 genomes]
rs4958058	0.82[EUR][1000 genomes]
rs4958060	0.82[EUR][1000 genomes]
rs62363752	0.82[EUR][1000 genomes]
rs62363754	0.82[EUR][1000 genomes]
rs62365777	0.82[EUR][1000 genomes]
rs62365780	0.82[EUR][1000 genomes]
rs6867472	0.82[EUR][1000 genomes]
rs6867731	0.82[EUR][1000 genomes]
rs6868091	0.84[EUR][1000 genomes]
rs71579190	0.82[EUR][1000 genomes]
rs7446737	0.87[ASN][1000 genomes]
rs7708839	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7737626	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111882800-111885600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr5:111883000-111884600	Enhancers	HSMMtube	muscle
3	chr5:111883000-111884800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:111883400-111885000	Enhancers	NH-A	brain
5	chr5:111883600-111884600	Enhancers	Stomach Mucosa	stomach
6	chr5:111883600-111884600	Enhancers	Osteobl	bone
7	chr5:111883600-111885000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:111883800-111885000	Enhancers	NHDF-Ad	bronchial
9	chr5:111883800-111887600	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:111884000-111884600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:111884200-111884600	Flanking Active TSS	K562	blood
12	chr5:111884400-111885000	Enhancers	Primary hematopoietic stem cells	blood
13	chr5:111884400-111885800	Enhancers	Primary B cells from peripheral blood	blood
14	chr5:111884400-111887800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:111884400-111890200	Weak transcription	Muscle Satellite Cultured Cells	--

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