Variant report

Variant	rs6890727
Chromosome Location	chr5:111921515-111921516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56927888	0.81[EUR][1000 genomes]
rs57827040	0.81[EUR][1000 genomes]
rs61367834	0.81[EUR][1000 genomes]
rs6895870	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72794000	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72795814	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72795818	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7380998	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv20349	chr5:111915807-111944317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111919600-111922600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:111920800-111921800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:111921200-111922600	Weak transcription	Fetal Heart	heart
4	chr5:111921400-111921800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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