Variant report

Variant	rs6890984
Chromosome Location	chr5:94413301-94413302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94412719..94414227-chr5:94417296..94419510,2	K562	blood:

Variant related genes	Relation type
ENSG00000175471	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11953163	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2347481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56819015	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73140029	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73140031	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73140041	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73140045	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73140046	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94404600-94416200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:94404800-94414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94406600-94413600	Weak transcription	Dnd41	blood
4	chr5:94406600-94415800	Weak transcription	Fetal Stomach	stomach
5	chr5:94407000-94417200	Weak transcription	Gastric	stomach
6	chr5:94407000-94423600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:94407600-94415600	Weak transcription	Primary B cells from cord blood	blood
8	chr5:94410000-94414200	Enhancers	Primary hematopoietic stem cells	blood
9	chr5:94410400-94414800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:94411000-94413600	Active TSS	GM12878-XiMat	blood
11	chr5:94411600-94415200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:94411600-94415800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:94412000-94413800	Flanking Active TSS	HUVEC	blood vessel
14	chr5:94412200-94414800	Enhancers	Hela-S3	cervix
15	chr5:94412200-94415800	Active TSS	Adipose Nuclei	Adipose
16	chr5:94412400-94413600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:94412400-94413600	Weak transcription	Brain Anterior Caudate	brain
18	chr5:94412400-94417200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:94412600-94413600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:94412600-94414000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:94412800-94414000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:94412800-94414200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:94413200-94413400	Enhancers	Monocytes-CD14+_RO01746	blood

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