The 2.0 version of rSNPBase

Variant report

Variant rs6891099
Chromosome Location chr5:1589387-1589388
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:1565800-1594200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr5:1566200-1594200 Weak transcription Brain Substantia Nigra brain
3 chr5:1568000-1594000 Weak transcription K562 blood
4 chr5:1568400-1594000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr5:1568400-1594000 Weak transcription Right Ventricle heart
6 chr5:1568800-1594200 Weak transcription Brain Hippocampus Middle brain
7 chr5:1568800-1594200 Weak transcription Placenta Amnion Placenta Amnion
8 chr5:1569000-1591600 Weak transcription Rectal Smooth Muscle rectum
9 chr5:1569000-1594000 Weak transcription HSMM muscle
10 chr5:1569000-1594200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr5:1569000-1594200 Weak transcription Psoas Muscle Psoas
12 chr5:1569400-1594000 Weak transcription HSMMtube muscle
13 chr5:1569400-1594000 Weak transcription HUVEC blood vessel
14 chr5:1569400-1594200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr5:1569600-1594000 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr5:1569600-1594400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr5:1569800-1594000 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr5:1570600-1594000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr5:1571200-1594400 Weak transcription Stomach Mucosa stomach
20 chr5:1571400-1594000 Weak transcription A549 lung
21 chr5:1571800-1594000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr5:1571800-1594000 Weak transcription Brain Cingulate Gyrus brain
23 chr5:1571800-1594000 Weak transcription Small Intestine intestine
24 chr5:1572600-1594000 Weak transcription Placenta Placenta
25 chr5:1573200-1594200 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr5:1578600-1594000 Weak transcription Esophagus oesophagus
27 chr5:1579600-1594000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr5:1579800-1594000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr5:1582400-1595000 Weak transcription Fetal Heart heart
30 chr5:1583200-1590200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr5:1584400-1594000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr5:1585200-1593400 Weak transcription Fetal Thymus thymus
33 chr5:1585200-1593800 Weak transcription Fetal Brain Male brain
34 chr5:1585200-1594000 Weak transcription Fetal Kidney kidney
35 chr5:1585200-1594000 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr5:1585400-1594000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr5:1585600-1593600 Strong transcription Fetal Stomach stomach
38 chr5:1586000-1593800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr5:1586400-1594000 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr5:1587000-1589400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr5:1587200-1592400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr5:1587400-1589400 Strong transcription Lung lung
43 chr5:1587400-1589400 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr5:1587400-1589600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr5:1587400-1589600 Strong transcription Primary B cells from peripheral blood blood
46 chr5:1587400-1589600 Strong transcription Primary T cells fromperipheralblood blood
47 chr5:1587400-1590400 Strong transcription Fetal Brain Female brain
48 chr5:1587400-1591400 Strong transcription Fetal Muscle Trunk muscle
49 chr5:1587400-1591800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr5:1587400-1592600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015