Variant report

Variant	rs6891162
Chromosome Location	chr5:111935667-111935668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111930631..111932232-chr5:111935331..111936839,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10052730	0.80[EUR][1000 genomes]
rs10052739	0.80[EUR][1000 genomes]
rs10067709	0.80[EUR][1000 genomes]
rs11742518	1.00[EUR][1000 genomes]
rs11747396	1.00[EUR][1000 genomes]
rs11750687	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162066	0.97[ASN][1000 genomes]
rs13185746	1.00[EUR][1000 genomes]
rs4073304	0.80[EUR][1000 genomes]
rs4073305	1.00[EUR][1000 genomes]
rs4073306	0.80[EUR][1000 genomes]
rs4957652	0.80[EUR][1000 genomes]
rs4957654	0.80[EUR][1000 genomes]
rs4957655	0.80[EUR][1000 genomes]
rs6594625	1.00[EUR][1000 genomes]
rs6594627	0.80[EUR][1000 genomes]
rs6594628	0.80[EUR][1000 genomes]
rs6594629	0.80[EUR][1000 genomes]
rs6594630	0.80[EUR][1000 genomes]
rs6594631	0.80[EUR][1000 genomes]
rs6594632	0.80[EUR][1000 genomes]
rs6594633	0.80[EUR][1000 genomes]
rs6594635	1.00[EUR][1000 genomes]
rs6594636	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594637	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6594638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594639	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6863537	0.80[EUR][1000 genomes]
rs6869830	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875324	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6881630	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6887003	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6891533	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7446196	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7448452	1.00[EUR][1000 genomes]
rs7448478	0.80[EUR][1000 genomes]
rs7448522	0.80[EUR][1000 genomes]
rs7717646	0.80[EUR][1000 genomes]
rs7737751	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv20349	chr5:111915807-111944317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3412261	chr5:111934895-111936251	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv819717	chr5:111935623-111947507	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111930800-111940000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:111931400-111940000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:111935400-111939000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links