Variant report

Variant	rs6891265
Chromosome Location	chr5:128179151-128179152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128170003..128172178-chr5:128179112..128180892,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10463848	0.91[ASN][1000 genomes]
rs1118422	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11241975	0.91[ASN][1000 genomes]
rs11241976	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1159432	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11745830	0.92[ASN][1000 genomes]
rs11952436	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs12153356	0.92[ASN][1000 genomes]
rs12521616	0.91[ASN][1000 genomes]
rs12521650	0.91[ASN][1000 genomes]
rs13163707	0.91[ASN][1000 genomes]
rs13169056	0.91[ASN][1000 genomes]
rs1363167	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1363463	0.92[ASN][1000 genomes]
rs1421891	0.97[ASN][1000 genomes]
rs1421892	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1421893	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1496346	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1496347	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1496348	0.84[JPT][hapmap]
rs1826816	0.92[ASN][1000 genomes]
rs1826817	0.92[ASN][1000 genomes]
rs1833548	0.91[ASN][1000 genomes]
rs1833549	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs1946200	0.92[ASN][1000 genomes]
rs1946202	0.92[ASN][1000 genomes]
rs1990881	0.97[ASN][1000 genomes]
rs1990919	0.90[ASN][1000 genomes]
rs2079101	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2106980	0.92[ASN][1000 genomes]
rs4835960	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4836410	0.92[ASN][1000 genomes]
rs4836411	0.92[ASN][1000 genomes]
rs4836412	0.92[ASN][1000 genomes]
rs6595865	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6881971	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7445108	0.92[ASN][1000 genomes]
rs757169	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7702784	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6891265	SLC27A6	cis	cerebellum	SCAN
rs6891265	SLC27A6	cis	parietal	SCAN
rs6891265	MPZL1	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128162200-128182800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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