Variant report

Variant	rs6891666
Chromosome Location	chr5:93159537-93159538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1453003	0.81[EUR][1000 genomes]
rs17083377	0.81[EUR][1000 genomes]
rs1982439	0.81[EUR][1000 genomes]
rs2924374	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
3	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
4	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:93131200-93179200	Weak transcription	Ovary	ovary
6	chr5:93137000-93165400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:93137000-93168400	Weak transcription	Pancreas	Pancrea
8	chr5:93137000-93168600	Weak transcription	Fetal Stomach	stomach
9	chr5:93137200-93160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:93137200-93160800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:93137200-93166800	Weak transcription	HSMM	muscle
12	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
13	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:93148800-93160400	Weak transcription	Adipose Nuclei	Adipose
17	chr5:93149400-93160400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:93149400-93161000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr5:93151800-93164800	Weak transcription	Primary B cells from cord blood	blood
20	chr5:93153800-93160200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:93153800-93166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:93154800-93160000	Weak transcription	Dnd41	blood
23	chr5:93155800-93160400	Weak transcription	Fetal Intestine Small	intestine
24	chr5:93156400-93167000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:93156600-93169200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:93157400-93160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr5:93158000-93164200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:93158000-93170400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:93158200-93164200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr5:93158200-93166600	Weak transcription	Primary T cells from cord blood	blood
31	chr5:93158400-93168000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:93158800-93160000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:93159000-93161600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:93159000-93166200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:93159200-93160000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:93159400-93161000	Weak transcription	HSMMtube	muscle

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