Variant report

Variant	rs6892045
Chromosome Location	chr5:107081424-107081425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6894244	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107079200-107081800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:107079200-107082400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:107079400-107081600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:107079400-107081600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:107079600-107081600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:107080000-107082400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:107080000-107083000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107080200-107082600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:107080600-107082200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:107080600-107082200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:107080600-107083200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:107080800-107081600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:107081000-107081800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr5:107081000-107082000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:107081200-107081800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:107081200-107082000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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