Variant report

Variant	rs6892379
Chromosome Location	chr5:178255281-178255282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6870307	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv600453	chr5:178252366-178259787	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178236800-178255800	Weak transcription	K562	blood
2	chr5:178253200-178255800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:178253200-178256000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:178253200-178257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:178253200-178257800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:178254000-178255800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:178254000-178259400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:178254200-178259400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:178254400-178258200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:178254600-178256800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:178255000-178255800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:178255000-178256000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:178255000-178257000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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