Variant report

Variant	rs6892860
Chromosome Location	chr5:58365249-58365250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58363195..58365401-chr5:58365586..58367971,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10061553	0.86[YRI][hapmap]
rs11739293	1.00[YRI][hapmap]
rs12654005	1.00[YRI][hapmap]
rs13178315	0.81[YRI][hapmap]
rs2968018	0.83[ASW][hapmap];0.88[GIH][hapmap];0.80[MEX][hapmap];0.82[MKK][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830313	chr5:58273724-58421098	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1032308	chr5:58312468-58371239	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58336200-58375600	Weak transcription	Left Ventricle	heart
2	chr5:58360200-58366000	Enhancers	HSMM	muscle
3	chr5:58360600-58373800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:58360800-58367200	Weak transcription	HepG2	liver
5	chr5:58361000-58365800	Enhancers	HSMMtube	muscle
6	chr5:58362200-58366000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:58362400-58368200	Weak transcription	Psoas Muscle	Psoas
8	chr5:58364200-58365400	Enhancers	NHLF	lung
9	chr5:58364400-58365400	Flanking Active TSS	A549	lung
10	chr5:58364400-58365600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:58364600-58365800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:58364600-58366000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:58364800-58365400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:58364800-58365400	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:58364800-58365800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:58364800-58366000	Enhancers	NHDF-Ad	bronchial
17	chr5:58365000-58365400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:58365000-58365400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:58365000-58365400	Genic enhancers	Hela-S3	cervix
20	chr5:58365000-58365400	Enhancers	NH-A	brain
21	chr5:58365000-58366000	Enhancers	Colon Smooth Muscle	Colon
22	chr5:58365000-58366000	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr5:58365200-58365600	Enhancers	Brain Substantia Nigra	brain
24	chr5:58365200-58366000	Enhancers	Rectal Smooth Muscle	rectum

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