Variant report

Variant	rs6893164
Chromosome Location	chr5:90179724-90179725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90178610..90180620-chr5:90180935..90182990,2	MCF-7	breast:
2	chr5:90163456..90166184-chr5:90179464..90181248,2	K562	blood:
3	chr5:90174163..90176497-chr5:90179359..90181555,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10942614	0.85[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10942615	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10942616	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10942617	0.85[CEU][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11948100	0.85[CEU][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs11956677	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1818350	0.85[CEU][hapmap]
rs4362971	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4382198	0.85[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4916692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4916824	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916825	0.89[ASN][1000 genomes]
rs4916830	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58258039	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58884460	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6861214	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6886778	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73771110	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73771113	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73771115	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73771117	0.82[ASN][1000 genomes]
rs73771118	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882367	chr5:89956991-90209824	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90163600-90194400	Weak transcription	Pancreas	Pancrea
2	chr5:90165400-90188800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:90168200-90186000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:90172600-90184400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:90174600-90185600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:90174800-90183400	Weak transcription	Liver	Liver
7	chr5:90175000-90184400	Weak transcription	K562	blood
8	chr5:90175200-90181400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:90175200-90182800	Weak transcription	A549	lung
10	chr5:90176400-90180800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:90176800-90179800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:90176800-90180400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:90177000-90180000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:90177000-90180000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:90177400-90179800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:90177600-90179800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr5:90177800-90179800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:90177800-90179800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:90178400-90179800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:90178800-90180800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:90179000-90179800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:90179400-90179800	Enhancers	Esophagus	oesophagus
23	chr5:90179600-90180600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:90179600-90190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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