Variant report

Variant	rs6893206
Chromosome Location	chr5:2092045-2092046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10039392	0.87[ASN][1000 genomes]
rs10039393	0.87[ASN][1000 genomes]
rs10062706	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066597	0.87[ASN][1000 genomes]
rs10067919	0.87[ASN][1000 genomes]
rs10068634	0.87[ASN][1000 genomes]
rs12054704	0.80[ASN][1000 genomes]
rs55637118	0.87[ASN][1000 genomes]
rs55637204	0.87[ASN][1000 genomes]
rs55719457	0.87[ASN][1000 genomes]
rs55791921	0.87[ASN][1000 genomes]
rs55920103	0.87[ASN][1000 genomes]
rs56130408	0.87[ASN][1000 genomes]
rs56173153	0.87[ASN][1000 genomes]
rs56186338	0.87[ASN][1000 genomes]
rs56188011	0.87[ASN][1000 genomes]
rs56277896	0.87[ASN][1000 genomes]
rs56365450	0.87[ASN][1000 genomes]
rs56408053	0.82[ASN][1000 genomes]
rs58739107	0.87[ASN][1000 genomes]
rs59104705	0.87[ASN][1000 genomes]
rs59337987	0.87[ASN][1000 genomes]
rs59685893	0.87[ASN][1000 genomes]
rs60006209	0.87[ASN][1000 genomes]
rs60697393	0.87[ASN][1000 genomes]
rs61623125	0.87[ASN][1000 genomes]
rs6869000	0.87[ASN][1000 genomes]
rs6869329	0.87[ASN][1000 genomes]
rs72708663	0.81[ASN][1000 genomes]
rs72708679	0.87[ASN][1000 genomes]
rs72708681	0.87[ASN][1000 genomes]
rs72708682	0.85[ASN][1000 genomes]
rs72708684	0.87[ASN][1000 genomes]
rs72708689	0.87[ASN][1000 genomes]
rs72708693	0.87[ASN][1000 genomes]
rs72708694	0.87[ASN][1000 genomes]
rs72708697	0.87[ASN][1000 genomes]
rs72708698	0.87[ASN][1000 genomes]
rs72708699	0.87[ASN][1000 genomes]
rs72708702	0.87[ASN][1000 genomes]
rs7702195	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427705	chr5:1950467-2115059	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1020211	chr5:2045699-2104887	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2088200-2097000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:2092000-2092400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:2092000-2095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links