Variant report

Variant	rs6893221
Chromosome Location	chr5:152120780-152120781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17113614	0.82[AFR][1000 genomes]
rs17113621	0.82[AFR][1000 genomes]
rs17113629	0.82[AFR][1000 genomes]
rs4132713	0.96[AFR][1000 genomes]
rs60421355	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272355	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152120400-152121000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr5:152120400-152121000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr5:152120400-152121400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr5:152120600-152120800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
5	chr5:152120600-152121000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr5:152120600-152121000	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr5:152120600-152121000	Active TSS	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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