Variant report

Variant	rs6893614
Chromosome Location	chr5:51970107-51970108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10512982	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10805439	0.85[ASN][1000 genomes]
rs10940262	0.93[EUR][1000 genomes]
rs11745561	0.83[ASN][1000 genomes]
rs12654895	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs164427	0.85[ASN][1000 genomes]
rs350422	0.81[ASN][1000 genomes]
rs351908	0.94[ASN][1000 genomes]
rs351959	0.81[ASN][1000 genomes]
rs351960	0.81[ASN][1000 genomes]
rs35615166	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35741743	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4865737	0.81[EUR][1000 genomes]
rs623193	0.94[ASN][1000 genomes]
rs62358725	0.96[ASN][1000 genomes]
rs635890	0.91[ASN][1000 genomes]
rs6450076	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879654	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768442	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs768443	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7715220	0.84[ASN][1000 genomes]
rs7716424	0.96[ASN][1000 genomes]
rs7732098	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752072	chr5:51649222-51972277	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2754787	chr5:51688543-52193243	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6893614	SNX18	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:51968400-51970200	Enhancers	Primary T cells from cord blood	blood
2	chr5:51968400-51970600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:51969200-51970600	Enhancers	NHDF-Ad	bronchial
4	chr5:51969400-51970400	Enhancers	HSMM	muscle
5	chr5:51969400-51970600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr5:51969400-51970600	Enhancers	Fetal Thymus	thymus
7	chr5:51969800-51970800	Enhancers	Dnd41	blood
8	chr5:51970000-51970600	Enhancers	Hela-S3	cervix

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