Variant report

Variant	rs6893932
Chromosome Location	chr5:116148846-116148847
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD10-10	chr5:116147785-116149816	NONHSAT103378

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17140561	0.83[AMR][1000 genomes]
rs55925406	0.83[AMR][1000 genomes]
rs57071614	0.83[AMR][1000 genomes]
rs58290332	0.83[AMR][1000 genomes]
rs58595570	0.83[AMR][1000 genomes]
rs59717285	0.83[AMR][1000 genomes]
rs59977726	0.83[AMR][1000 genomes]
rs60389184	0.83[AMR][1000 genomes]
rs6894459	0.83[AMR][1000 genomes]
rs73782483	0.83[AMR][1000 genomes]
rs73782484	0.83[AMR][1000 genomes]
rs73782485	0.83[AMR][1000 genomes]
rs73782486	0.83[AMR][1000 genomes]
rs73782500	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782502	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7715729	1.00[ASN][1000 genomes]
rs9688176	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1027701	chr5:116138286-116185586	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116146400-116150400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:116146400-116156400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:116146800-116150800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:116147000-116150200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:116147000-116150200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:116147000-116150200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:116147000-116150200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:116147000-116150400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:116147200-116149000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:116147200-116149400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:116147200-116149800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:116147200-116150000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:116147200-116150200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:116147200-116150200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:116147200-116150200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:116147400-116149000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:116147600-116150200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:116148000-116149200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:116148000-116150200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:116148200-116149400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr5:116148400-116150200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:116148600-116150800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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