Variant report

Variant	rs6894681
Chromosome Location	chr5:127218995-127218996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10491253	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10491254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11744423	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61206778	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73347072	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127207800-127220800	Weak transcription	Brain Angular Gyrus	brain
2	chr5:127211600-127220600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr5:127212200-127219600	Weak transcription	Small Intestine	intestine
4	chr5:127212400-127220200	Weak transcription	Psoas Muscle	Psoas
5	chr5:127212400-127220800	Weak transcription	Fetal Lung	lung
6	chr5:127214400-127219600	Weak transcription	Fetal Intestine Large	intestine
7	chr5:127214400-127219600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:127214400-127220200	Weak transcription	Brain Substantia Nigra	brain
9	chr5:127214400-127221800	Weak transcription	Left Ventricle	heart
10	chr5:127215800-127220800	Weak transcription	Fetal Stomach	stomach
11	chr5:127216800-127221000	Enhancers	Stomach Mucosa	stomach
12	chr5:127217200-127221400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr5:127218400-127220000	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:127218400-127223200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:127218600-127220000	Weak transcription	A549	lung
16	chr5:127218600-127220200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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