Variant report
Variant | rs6894854 |
---|---|
Chromosome Location | chr5:126909061-126909062 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs17164785 | 1.00[EUR][1000 genomes] |
rs17839686 | 0.93[EUR][1000 genomes] |
rs34236997 | 1.00[ASN][1000 genomes] |
rs3756723 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs55654285 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55749092 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57117879 | 1.00[ASN][1000 genomes] |
rs58380010 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60285859 | 1.00[ASN][1000 genomes] |
rs60654462 | 1.00[ASN][1000 genomes] |
rs61220586 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61736664 | 0.93[EUR][1000 genomes] |
rs6875028 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6893537 | 1.00[ASN][1000 genomes] |
rs6893841 | 1.00[ASN][1000 genomes] |
rs6893881 | 1.00[ASN][1000 genomes] |
rs6898899 | 1.00[ASN][1000 genomes] |
rs73335069 | 1.00[ASN][1000 genomes] |
rs73335075 | 1.00[ASN][1000 genomes] |
rs73335078 | 1.00[ASN][1000 genomes] |
rs73335089 | 1.00[ASN][1000 genomes] |
rs73335092 | 1.00[ASN][1000 genomes] |
rs73783907 | 1.00[EUR][1000 genomes] |
rs73783908 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783909 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783910 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783911 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783912 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783913 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783914 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783917 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783918 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73783922 | 1.00[ASN][1000 genomes] |
rs73783923 | 1.00[ASN][1000 genomes] |
rs73783924 | 1.00[ASN][1000 genomes] |
rs73783925 | 1.00[ASN][1000 genomes] |
rs7705105 | 1.00[ASN][1000 genomes] |
rs7710290 | 1.00[ASN][1000 genomes] |
rs7715074 | 1.00[ASN][1000 genomes] |
rs7723932 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1033607 | chr5:126385181-127304459 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
2 | nsv1019821 | chr5:126658200-126934917 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv537894 | chr5:126658200-126934917 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | nsv830478 | chr5:126721368-126937408 | Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
5 | nsv830479 | chr5:126849254-127053121 | Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
6 | nsv4990 | chr5:126899519-126920342 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:126906200-126909200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
2 | chr5:126907800-126909200 | Enhancers | GM12878-XiMat | blood |